commit 2eff037f6bc623b8826ce8b7fea63bc21d4dc45f
Author: Paul <paul@zom.bi>
Date:   Tue Jan 12 08:49:20 2021 +0100

    Initial commit

diff --git a/000-default.conf b/000-default.conf
new file mode 100644
index 0000000..9853c50
--- /dev/null
+++ b/000-default.conf
@@ -0,0 +1,14 @@
+<VirtualHost *:80>
+        ServerAdmin webmaster@localhost
+        DocumentRoot /var/www/html
+
+        # Available loglevels: trace8, ..., trace1, debug, info, notice, warn,
+        # error, crit, alert, emerg.
+        LogLevel warn
+
+        ErrorLog ${APACHE_LOG_DIR}/error.log
+        CustomLog ${APACHE_LOG_DIR}/access.log combined
+
+        Alias /wiki /var/www/html/index.php
+        Alias /uploads /var/www/localstore/images
+</VirtualHost>
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..ec9e2dd
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,87 @@
+FROM mediawiki:1.35
+
+ARG COMPOSER_VERSION=2.0.8
+
+ENV \
+    WG_SITENAME="Test Wiki" \
+    WG_SCRIPT_PATH="" \
+    WG_SERVER="https://wiki.example.com" \
+    SEMANTIC_URL="wiki.example.com" \
+    WG_ENABLE_UPLOADS="false" \
+    WG_ENABLE_EMAIL="false" \
+    WG_UPLOAD_PATH="/uploads" \
+    WG_META_NAMESPACE="Meta" \
+    WG_LANGUAGE_CODE="en" \
+    MEDIAWIKI_ADMIN_USER="admin" \
+    MEDIAWIKI_ADMIN_PASS="password" \
+    WG_DB_TYPE="sqlite" \
+    WG_DB_SERVER="" \
+    WG_DB_NAME="my_wiki" \
+    WG_DB_PASSWORD="password" \
+    WG_DB_PREFIX="" \
+    WG_DB_MWSCHEMA="" \
+    WG_DATABASE_DIR="/var/www/data" \
+    WG_SECRET_KEY="0000000000000000000000000000000000000000000000000000000000000000" \
+    WG_EMERGENCY_CONTACT="admin@example.com" \
+    WG_PASSWORD_SENDER="wiki@example.com" \
+    ALLOW_PUBLIC_REGISTRATION="false" \
+    ALLOW_PUBLIC_EDIT="false" \
+    ALLOW_PUBLIC_READ="true" \
+    DISABLE_ICONS="false" \
+    DEBUG="false"
+
+# System dependencies for extensions
+RUN set -eu; \
+    apt-get update; \
+    apt-get install -y --no-install-recommends \
+        zip \
+        unzip \
+        libpq-dev \
+        cron \
+        rclone \
+    ; \
+    rm -rf /var/lib/apt/lists/*
+
+# PHP extensions
+RUN set -eu; \
+    docker-php-ext-install -j$(nproc) pgsql; \
+    docker-php-ext-install -j$(nproc) pdo_pgsql
+
+RUN set -eu; \
+    mkdir /var/www/conf; \
+    mkdir -p /var/www/localstore/smwconfig; \
+    mkdir -p /var/www/localstore/images
+
+# Non-composer based extensions
+# JsonConfig required by Graph.
+RUN set -euo pipefail; \
+    cd /var/www/html/extensions; \
+    curl https://extdist.wmflabs.org/dist/extensions/JsonConfig-REL1_35-a0bdbfb.tar.gz |tar -xz; \
+    curl https://extdist.wmflabs.org/dist/extensions/Graph-REL1_35-fa2b9af.tar.gz |tar -xz; \
+    curl https://extdist.wmflabs.org/dist/extensions/SubPageList3-REL1_35-622c298.tar.gz| tar -xz; \
+    curl https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_35-5998b96.tar.gz| tar -xz; \
+    curl https://extdist.wmflabs.org/dist/extensions/TemplateStyles-REL1_35-7743810.tar.gz| tar -xz
+
+# Install composer packages
+RUN set -eu; \
+    curl -o /tmp/composer-setup.php https://getcomposer.org/installer; \
+    curl -o /tmp/composer-setup.sig https://composer.github.io/installer.sig; \
+    php -r "if (hash('SHA384', file_get_contents('/tmp/composer-setup.php')) !== trim(file_get_contents('/tmp/composer-setup.sig'))) { unlink('/tmp/composer-setup.php'); echo 'Invalid installer' . PHP_EOL; exit(1); }"; \
+    php /tmp/composer-setup.php --no-ansi --install-dir=/usr/local/bin --filename=composer --version=${COMPOSER_VERSION}; \
+    rm -rf /tmp/composer-setup.php; \
+    ln -s /var/www/conf/LocalSettings.local.php /var/www/html/LocalSettings.local.php; \
+    ln -s /var/www/conf/LocalSettings.php /var/www/html/LocalSettings.php
+COPY composer.local.json /var/www/html
+RUN composer update --no-dev
+
+# Place config files
+COPY conf/* /var/www/conf/
+COPY 000-default.conf /etc/apache2/sites-available
+
+# Place our maintenence and setup scripts
+COPY scripts/* /usr/local/bin/
+RUN chmod 755 /usr/local/bin/*
+
+# Add crontab file in the cron directory
+ADD crontab /etc/crontab
+RUN chmod 0644 /etc/crontab
diff --git a/composer.local.json b/composer.local.json
new file mode 100644
index 0000000..7ec8c49
--- /dev/null
+++ b/composer.local.json
@@ -0,0 +1,10 @@
+{
+    "require": {
+        "mediawiki/semantic-bundle": "~4.0",
+        "mediawiki/semantic-scribunto": "~2.1",
+
+        "mediawiki/mermaid": "~3.0",
+
+        "wikimedia/css-sanitizer": "2.0.1"
+    }
+}
\ No newline at end of file
diff --git a/conf/LocalSettings.local.php b/conf/LocalSettings.local.php
new file mode 100644
index 0000000..eca9a28
--- /dev/null
+++ b/conf/LocalSettings.local.php
@@ -0,0 +1,3 @@
+<?php
+# This file can be replaced by mounting in a custom configuration, that will
+# augment the generated config.
diff --git a/conf/LocalSettings.php b/conf/LocalSettings.php
new file mode 100644
index 0000000..1051cca
--- /dev/null
+++ b/conf/LocalSettings.php
@@ -0,0 +1,185 @@
+<?php
+# Further documentation for configuration settings may be found at:
+# https://www.mediawiki.org/wiki/Manual:Configuration_settings
+
+# Protect against web entry
+if ( !defined( 'MEDIAWIKI' ) ) {
+    exit;
+}
+
+## Uncomment this to disable output compression
+# $wgDisableOutputCompression = true;
+
+$wgSitename = getenv("WG_SITE_NAME");
+$wgMetaNamespace = "Meta";
+
+$wgScriptPath = getenv("WG_SCRIPT_PATH");
+
+$wgServer = getenv("WG_SERVER");
+
+$wgUploadPath = getenv("MEDIAWIKI_UPLOAD_PATH");
+
+# Article path
+$wgArticlePath = "/wiki/$1";
+$wgUploadDirectory = "/var/www/localstore/images";
+
+## The URL path to static resources (images, scripts, etc.)
+$wgResourceBasePath = $wgScriptPath;
+
+## UPO means: this is also a user preference option
+
+$wgEnableEmail = getenv("WG_ENABLE_EMAIL");
+$wgEnableUserEmail = true; # UPO
+
+$wgEmergencyContact = getenv("WG_EMERGENCY_CONTACT");
+$wgPasswordSender = getenv("WG_PASSWORD_SENDER");
+
+$wgEnotifUserTalk = false; # UPO
+$wgEnotifWatchlist = false; # UPO
+$wgEmailAuthentication = true;
+
+## Database settings
+$wgDBtype = getenv("WG_DB_TYPE");
+$wgDBserver = getenv("WG_DB_SERVER");
+$wgDBname = getenv("WG_DB_NAME");
+$wgDBuser = getenv("WG_DB_USER");
+$wgDBpassword = getenv("WG_DB_PASSWORD");
+$wgDBport = getenv("WG_DB_PORT");
+
+# Postgres specific settings
+if (getenv("WG_DB_MWSCHEMA")) {
+    $wgDBmwschema = getenv("WG_DB_MWSCHEMA");
+}
+
+# SQLite-specific settings
+$wgSQLiteDataDir = getenv("WG_DATABASE_DIR");
+
+## Shared memory settings
+if(php_sapi_name() == "cli") {
+    $wgMainCacheType    = CACHE_NONE;
+} else {
+    $wgMainCacheType    = CACHE_ACCEL;
+}
+$wgMemCachedServers = [];
+
+$wgEnableUploads = getenv("WG_ENABLE_UPLOADS");
+$wgUseImageMagick = true;
+$wgImageMagickConvertCommand = "/usr/bin/convert";
+
+$wgUseInstantCommons = false;
+
+# telemetry
+$wgPingback = false;
+
+## If you use ImageMagick (or any other shell command) on a
+## Linux server, this will need to be set to the name of an
+## available UTF-8 locale
+$wgShellLocale = "C.UTF-8";
+
+## Set $wgCacheDirectory to a writable directory on the web server
+## to make your wiki go slightly faster. The directory should not
+## be publically accessible from the web.
+#$wgCacheDirectory = "$IP/cache";
+
+# Site language code, should be one of the list in ./languages/data/Names.php
+$wgLanguageCode = getenv("WG_LANGUAGE_CODE");
+
+$wgSecretKey = getenv("WG_SECRET_KEY");
+
+# Changing this will log out all existing sessions.
+$wgAuthenticationTokenVersion = "1";
+
+# Site upgrade key. Must be set to a string (default provided) to turn on the
+# web installer while LocalSettings.php is in place
+$wgUpgradeKey = "15ae97f94f551121";
+
+## For attaching licensing metadata to pages, and displaying an
+## appropriate copyright notice / icon. GNU Free Documentation
+## License and Creative Commons licenses are supported so far.
+$wgRightsPage = ""; # Set to the title of a wiki page that describes your license/copyright
+$wgRightsUrl = "";
+$wgRightsText = "";
+$wgRightsIcon = "";
+
+# Path to the GNU diff3 utility. Used for conflict resolution.
+$wgDiff3 = "/usr/bin/diff3";
+
+$wgGroupPermissions['*']['createaccount'] = !!getenv("ALLOW_PUBLIC_REGISTRATION");
+$wgGroupPermissions['*']['edit'] = !!getenv("ALLOW_PUBLIC_EDIT");
+$wgGroupPermissions['*']['read'] = !!getenv("ALLOW_PUBLIC_READ");
+
+## Default skin: you can change the default skin. Use the internal symbolic
+## names, ie 'vector', 'monobook':
+$wgDefaultSkin = "vector";
+
+# Enabled skins.
+# The following skins were automatically enabled:
+wfLoadSkin( 'MonoBook' );
+wfLoadSkin( 'Timeless' );
+wfLoadSkin( 'Vector' );
+
+# Enabled extensions. Most of the extensions are enabled by adding
+# wfLoadExtensions('ExtensionName');
+# to LocalSettings.php. Check specific extension documentation for more details.
+# The following extensions were automatically enabled:
+wfLoadExtension( 'CategoryTree' );
+wfLoadExtension( 'Cite' );
+wfLoadExtension( 'CodeEditor' );
+wfLoadExtension( 'ImageMap' );
+wfLoadExtension( 'InputBox' );
+wfLoadExtension( 'OATHAuth' );
+wfLoadExtension( 'ParserFunctions' );
+wfLoadExtension( 'PdfHandler' );
+wfLoadExtension( 'SyntaxHighlight_GeSHi' );
+wfLoadExtension( 'WikiEditor' );
+
+# End of automatically generated settings.
+# Add more configuration options below.
+
+# Load our extensions
+wfLoadExtension( 'JsonConfig' );  # Configuration via Special Wiki Pages containing JSON
+wfLoadExtension( 'TemplateStyles' );  # Embedd Styles from Wiki Pages containing CSS
+wfLoadExtension( 'Scribunto' );  # Lua scripting
+wfLoadExtension( 'SemanticScribunto' );  # Lua scripting using semantic information
+wfLoadExtension( 'Mermaid' );  # Diagrams and flowcharts
+
+# scribunto configuration
+$wgScribuntoDefaultEngine = 'luastandalone';
+
+require_once '/var/www/html/extensions/SemanticBundle/SemanticBundle.php';
+
+# Turn on SemanticMediaWiki
+enableSemantics( getenv("SEMANTIC_URL") );
+
+# Set Subpages on
+$wgNamespacesWithSubpages[NS_MAIN] = 1;
+
+# Enable long error messages
+if (getenv("DEBUG")) {
+    $wgShowExceptionDetails = true;
+    $wgShowDBErrorBacktrace = true;
+    $wgShowSQLErrors = true;
+}
+
+#  Local configuration for MediaWiki
+ini_set( 'max_execution_time', 1000 );
+ini_set('memory_limit', '-1'); 
+
+# Move the SMW config directory
+$smwgConfigFileDir = '/var/www/localstore/smwconfig';
+
+# Icons
+$wgLogo = "favicon-135x135.png";
+$wgLogoHD = [
+    "1.5x" => "favicon-202x202.png",
+    "2x" => "favicon-202x202.png"
+];
+
+# Footer icons
+
+if (getenv("DISABLE_ICONS")) {
+    unset( $wgFooterIcons['poweredby'] ); 
+}
+
+# Responsive
+$wgVectorResponsive = true;
\ No newline at end of file
diff --git a/crontab b/crontab
new file mode 100644
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--- /dev/null
+++ b/crontab
@@ -0,0 +1,12 @@
+# Reference: https://www.semantic-mediawiki.org/wiki/Cron_jobs
+
+# Every day at 07:45, Update Special Pages
+45 7 * * * root /usr/local/bin/updateSpecialPages.sh  > /proc/1/fd/1 2>/proc/1/fd/2
+
+# SemanticMediaWiki recommended maintenance
+30 * * * * root /usr/local/bin/updateEntityCollation.sh > /proc/1/fd/1 2>/proc/1/fd/2
+15 9 * * SAT root /usr/local/bin/rebuildData.sh > /proc/1/fd/1 2>/proc/1/fd/2
+15 9 * * SUN root /usr/local/bin/setupStore.sh > /proc/1/fd/1 2>/proc/1/fd/2
+15 3 1 * * root php /usr/local/bin/removeDuplicateEntities.sh > /proc/1/fd/1 2>/proc/1/fd/2
+
+# file requires a trailing newline!
diff --git a/scripts/crontab-foreground b/scripts/crontab-foreground
new file mode 100644
index 0000000..a2ae5ea
--- /dev/null
+++ b/scripts/crontab-foreground
@@ -0,0 +1,4 @@
+#!/bin/bash
+set -e
+
+cron -f -L 15
\ No newline at end of file
diff --git a/scripts/db-setup.sh b/scripts/db-setup.sh
new file mode 100644
index 0000000..122fcab
--- /dev/null
+++ b/scripts/db-setup.sh
@@ -0,0 +1,39 @@
+#!/bin/bash
+set -euo pipefail
+
+cd /var/www/html/
+
+# The install script doesn't want there to be a LocalSettings.php file
+echo Killing LocalSettings.php
+echo
+
+rm /var/www/html/LocalSettings.php
+
+echo Install.php
+echo
+
+php maintenance/install.php --dbtype "${MEDIAWIKI_DB_TYPE}" --dbname "${MEDIAWIKI_DB_NAME}" --dbuser "${MEDIAWIKI_DB_USER}" --dbport "${MEDIAWIKI_DB_PORT}" --dbpass "${MEDIAWIKI_DB_PASSWORD}" --scriptpath "/var/www/html/" --dbserver "${MEDIAWIKI_DB_HOST}" --pass "${MEDIAWIKI_ADMIN_PASS}" --dbpath "${MEDIAWIKI_DATABASE_DIR}" "${MEDIAWIKI_SITE_NAME}" "${MEDIAWIKI_ADMIN_USER}"
+
+# Now, we're going to replace the LocalSettings.php file that install.php just generated with ours
+# This way, update.php will work.
+rm /var/www/html/LocalSettings.php
+ln -s /var/www/conf/LocalSettings.php /var/www/html/LocalSettings.php
+
+echo LocalSettings.php restored
+echo
+
+echo Creating localstore
+echo
+
+# Copy the htaccess file
+mkdir -p /var/www/localstore/images
+mkdir -p /var/www/localstore/smwconfig 
+cp /var/www/html/images/* /var/www/localstore/images
+chown -R www-data:www-data /var/www/localstore
+
+# Run update.php, to set up all of the extensions
+
+echo update.php
+echo
+
+php maintenance/update.php --quick
\ No newline at end of file
diff --git a/scripts/ensure-permissions.sh b/scripts/ensure-permissions.sh
new file mode 100644
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--- /dev/null
+++ b/scripts/ensure-permissions.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+set -euo pipefail
+
+# Copy the htaccess file
+mkdir -p /var/www/localstore/images
+mkdir -p /var/www/localstore/smwconfig 
+cp /var/www/html/images/* /var/www/localstore/images
+chown -R www-data:www-data /var/www/localstore
+chown -R www-data:www-data /var/www/data
diff --git a/scripts/mwjobrunner b/scripts/mwjobrunner
new file mode 100644
index 0000000..f2871f1
--- /dev/null
+++ b/scripts/mwjobrunner
@@ -0,0 +1,23 @@
+#!/bin/bash
+set -euo pipefail
+
+# From https://www.mediawiki.org/wiki/Manual:Job_queue
+IP=/var/www/html
+RJ=$IP/maintenance/runJobs.php
+echo Starting job service...
+# Wait a minute after the server starts up to give other processes time to get started
+sleep 60
+echo Started.
+while true; do
+    # Job types that need to be run ASAP mo matter how many of them are in the queue
+    # Those jobs should be very "cheap" to run
+    php $RJ --type="enotifNotify"
+    php $RJ --type="htmlCacheUpdate" --maxjobs=50
+    # Everything else, limit the number of jobs on each batch
+    # The --wait parameter will pause the execution here until new jobs are added,
+    # to avoid running the loop without anything to do
+    php $RJ --wait --maxjobs=10
+    # Wait some seconds to let the CPU do other things, like handling web requests, etc
+    echo Waiting for 10 seconds...
+    sleep 10
+done
\ No newline at end of file
diff --git a/scripts/rebuildData.sh b/scripts/rebuildData.sh
new file mode 100644
index 0000000..c6bd418
--- /dev/null
+++ b/scripts/rebuildData.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+set -euo pipefail
+
+echo rebuildData
+echo 
+
+php /var/www/html/extensions/SemanticMediaWiki/maintenance/rebuildData.php -d 100
+echo rebuildData finished
\ No newline at end of file
diff --git a/scripts/removeDuplicateEntities.sh b/scripts/removeDuplicateEntities.sh
new file mode 100644
index 0000000..c5a5695
--- /dev/null
+++ b/scripts/removeDuplicateEntities.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+set -euo pipefail
+
+echo removeDuplicateEntities
+echo 
+
+/usr/local/bin/php /var/www/html/extensions/SemanticMediaWiki/maintenance/removeDuplicateEntities.php
+echo removeDuplicateEntities finished
+
diff --git a/scripts/run-update.sh b/scripts/run-update.sh
new file mode 100644
index 0000000..6326a2b
--- /dev/null
+++ b/scripts/run-update.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+set -euo pipefail
+
+/usr/local/bin/php maintenance/update.php
\ No newline at end of file
diff --git a/scripts/setupStore.sh b/scripts/setupStore.sh
new file mode 100644
index 0000000..539377a
--- /dev/null
+++ b/scripts/setupStore.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+set -euo pipefail
+
+echo setupStore
+echo 
+
+/usr/local/bin/php /var/www/html/extensions/SemanticMediaWiki/maintenance/setupStore.php --skip-import
+echo setupStore finished
\ No newline at end of file
diff --git a/scripts/updateEntityCollation.sh b/scripts/updateEntityCollation.sh
new file mode 100644
index 0000000..28288ff
--- /dev/null
+++ b/scripts/updateEntityCollation.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+set -euo pipefail
+
+echo updateEntityCollation
+echo 
+
+/usr/local/bin/php /var/www/html/extensions/SemanticMediaWiki/maintenance/updateEntityCollation.php
+echo updateEntityCollation finished
\ No newline at end of file
diff --git a/scripts/updateSpecialPages.sh b/scripts/updateSpecialPages.sh
new file mode 100644
index 0000000..9ac6ec6
--- /dev/null
+++ b/scripts/updateSpecialPages.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+set -euo pipefail
+
+echo updateSpecialPages
+echo 
+
+/usr/local/bin/php /var/www/html/maintenance/updateSpecialPages.php
+echo updateSpecialPages finished
\ No newline at end of file